Package: depthTools 0.7

depthTools: Depth Tools Package

Implementation of different statistical tools for the description and analysis of gene expression data based on the concept of data depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods. All these techniques are based on the Modified Band Depth, which is a recent notion of depth with a low computational cost, what renders it very appropriate for high dimensional data such as gene expression data.

Authors:Sara Lopez-Pintado <[email protected]> and Aurora Torrente <[email protected]>.

depthTools_0.7.tar.gz
depthTools_0.7.zip(r-4.7)depthTools_0.7.zip(r-4.6)depthTools_0.7.zip(r-4.5)
depthTools_0.7.tgz(r-4.6-any)depthTools_0.7.tgz(r-4.5-any)
depthTools_0.7.tar.gz(r-4.7-any)depthTools_0.7.tar.gz(r-4.6-any)
depthTools_0.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
depthTools/json (API)

# Install 'depthTools' in R:
install.packages('depthTools', repos = c('https://aurora-torrente.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • prostate - Gene Expression Data from Tumoral and Normal Prostate Samples and Labels

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 3 packages 11 scripts 484 downloads 1 mentions 7 exports 0 dependencies

Last updated from:87a3c89bdd. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK97
source / vignettesOK147
linux-release-x86_64OK86
macos-release-arm64OK93
macos-oldrel-arm64OK66
windows-develOK67
windows-releaseOK93
windows-oldrelOK68
wasm-releaseOK90

Exports:centralPlotclassDSclassTADMBDR.testscalecurvetmean

Dependencies: