Package: depthTools 0.7

depthTools: Depth Tools Package

Implementation of different statistical tools for the description and analysis of gene expression data based on the concept of data depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods. All these techniques are based on the Modified Band Depth, which is a recent notion of depth with a low computational cost, what renders it very appropriate for high dimensional data such as gene expression data.

Authors:Sara Lopez-Pintado <[email protected]> and Aurora Torrente <[email protected]>.

depthTools_0.7.tar.gz
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depthTools.pdf |depthTools.html
depthTools/json (API)

# Install 'depthTools' in R:
install.packages('depthTools', repos = c('https://aurora-torrente.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • prostate - Gene Expression Data from Tumoral and Normal Prostate Samples and Labels

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

7 exports 1.24 score 0 dependencies 3 dependents 1 mentions 8 scripts 452 downloads

Last updated 3 years agofrom:87a3c89bdd. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 11 2024
R-4.5-winOKSep 11 2024
R-4.5-linuxOKSep 11 2024
R-4.4-winOKSep 11 2024
R-4.4-macOKSep 11 2024
R-4.3-winOKSep 11 2024
R-4.3-macOKSep 11 2024

Exports:centralPlotclassDSclassTADMBDR.testscalecurvetmean

Dependencies: