Package: RcmdrPlugin.depthTools 1.4
RcmdrPlugin.depthTools: R Commander Depth Tools Plug-in
We provide an Rcmdr plug-in based on the depthTools package, which implements different robust statistical tools for the description and analysis of gene expression data based on the Modified Band Depth, namely, the scale curves for visualizing the dispersion of one or various groups of samples (e.g. types of tumors), a rank test to decide whether two groups of samples come from a single distribution and two methods of supervised classification techniques, the DS and TAD methods.
Authors:
RcmdrPlugin.depthTools_1.4.tar.gz
RcmdrPlugin.depthTools_1.4.zip(r-4.5)RcmdrPlugin.depthTools_1.4.zip(r-4.4)RcmdrPlugin.depthTools_1.4.zip(r-4.3)
RcmdrPlugin.depthTools_1.4.tgz(r-4.5-any)RcmdrPlugin.depthTools_1.4.tgz(r-4.4-any)RcmdrPlugin.depthTools_1.4.tgz(r-4.3-any)
RcmdrPlugin.depthTools_1.4.tar.gz(r-4.5-noble)RcmdrPlugin.depthTools_1.4.tar.gz(r-4.4-noble)
RcmdrPlugin.depthTools_1.4.tgz(r-4.4-emscripten)RcmdrPlugin.depthTools_1.4.tgz(r-4.3-emscripten)
RcmdrPlugin.depthTools.pdf |RcmdrPlugin.depthTools.html✨
RcmdrPlugin.depthTools/json (API)
| # Install 'RcmdrPlugin.depthTools' in R: |
| install.packages('RcmdrPlugin.depthTools', repos = c('https://aurora-torrente.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 4 years agofrom:c698280d03. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 19 2025 |
| R-4.5-win | OK | Feb 19 2025 |
| R-4.5-mac | OK | Feb 19 2025 |
| R-4.5-linux | OK | Feb 19 2025 |
| R-4.4-win | OK | Feb 19 2025 |
| R-4.4-mac | OK | Feb 19 2025 |
| R-4.3-win | OK | Feb 19 2025 |
| R-4.3-mac | OK | Feb 19 2025 |
Exports:computeMBDcomputeScaleCurvecomputeTmeanplotCentralCurvesrunDSrunRtestrunTAD
Dependencies:abindbackportsbase64encbitbit64bootbroombslibcachemcarcarDatacellrangercheckmateclassclicliprclustercolorspacecowplotcpp11crayondata.tableDBIdepthToolsDerivdigestdoBydplyre1071effectsestimabilityevaluatefansifarverfastmapfontawesomeforcatsforeignFormulafsgenericsggplot2gluegridExtragtablehavenhighrHmischmshtmlTablehtmltoolshtmlwidgetsinsightisobandjquerylibjsonliteknitrlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminqamitoolsmodelrmunsellnlmenloptrnnetnortestnumDerivpbkrtestpillarpkgconfigprettyunitsprogressproxypurrrquantregR6rappdirsrbibutilsRcmdrRcmdrMiscRColorBrewerRcppRcppArmadilloRcppEigenRdpackreadrreadstata13readxlreformulasrelimprematchrlangrmarkdownrpartrstudioapisandwichsassscalesSparseMstringistringrsurveysurvivaltcltk2tibbletidyrtidyselecttinytextzdbutf8vctrsviridisviridisLitevroomwithrxfunyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Graphical User Interface for depthTools | RcmdrPlugin.depthTools-package RcmdrPlugin.depthTools |
| Computation of the Modified Band Depth in R-commander | computeMBD |
| Computation and Representation of the Scale Curve | computeScaleCurve |
| Modified Band Depth-Based Alpha Trimmed Mean | computeTmean |
| Plot of the p Percent Most Central Curves of a Dataset | plotCentralCurves |
| Distance to the Trimmed Mean Classification Method | runDS |
| Rank Test Based on the Modified Band Depth | runRtest |
| Weighted Trimmed Mean Distance Classification Method | runTAD |
